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rs256137199 SNP Detail
Summary
  • ID
    rs256137199
  • Variation Type
    SNP
  • Alleles
    G
Genome Location and Flanking Sequence
  • Location
    Chr2:70688962 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GAAATGACCA GGCTGAGGAA
    GAGGCATGCA TGAGCAAGGC TGACTGCGTG GGACATCCAA TCCCACACTC CACCAGGGAA
    TAAAGTAGGC TTCATAGTGA AAAAGAGGTC AGAGACATTT AAGTTCAATA AAAATTAGTG
    CTGAAAGTCA TTGAAATAAT TTTTCATGGA GGAAAAAACT GAATCCATTT CGTTAGATTA
    G
    AAAAAAAAAA AAAAAGAAAG AAAACAGGGA AGGGAAGCTT GAAGCTCGGC GTTCTTGGCA
    ATCATGGCGG GAATCAGAGC GCAGCCCATT TTCTGCCCGC CCCCCCCCCC CCCCCCCCCC
    GATCTAACTC AGCCCTTTCC TGAATCCATT CAAAATGCAG AGTGTCGGAG GCTGACAAGC
    TGGAGTCAGC CTCCAGTCTT                                            
    
    G = G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BUB/BnJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/2J
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
WSB/EiJ
ZALENDE/EiJ
ss354402251 MGP_WTSI_2_70696675 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BUB/BnJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/2J
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
WSB/EiJ
ZALENDE/EiJ
rs256137199 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss354402251 MGP_WTSI_2_70696675 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:70688962 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm13633 predicted gene 13633 968 bp downstream
Gm75544 predicted gene, 75544 within coordinates
Rr558618 regulatory region 558618 1311 bp proximal
Rr558619 regulatory region 558619 1534 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory