rs256108007 SNP Detail

Summary

• ID
  rs256108007
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156577769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCCTACCC CACCCCACCC
  CATCCCACCA GACCTCCCCA CTCCCTGGGC CCTCAACCTC AAGTCTTTCA AGAGTTAGGT
  GCATCTTCCC TGACTGAGTC CAGACCCGGC AGTCCTCTGC TGTATATGTG TCTGGGGCCT
  CATATCAGCT GGTGTATGCT GCCTGGTTGG TGGCTCAGTG TCTGAGAGAT CTCGGGGGGG
  T
  GGTGGGGGGG TGGGGTGGGG GAGGTCCGGG TTAGTTGAGA CTGCTGGTCT TCCTATGTGA
  CTGCCCTCCT CCTCAGCTTC TTCCAGCCTT TCCCTAATTC AACCACTGAG GTCCCCAGCC
  TCTGTCCATT GGTTGGGTGC TAGTATCTGC ATCTGACTCT TTCAGCTGCT TGTTGGGCCT
  CTCATAGGGC AGCCATGCTA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	MA/MyJ	NZO/HlLtJ	PL/J	RIIIS/J	SM/J	ST/bJ
ss352044681	MGP_WTSI_1_158680330	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	MA/MyJ	NZO/HlLtJ	PL/J	RIIIS/J	SM/J	ST/bJ
rs256108007					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352044681	MGP_WTSI_1_158680330	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156577769 () rs orientation: forward

Symbol	Name	Function Class
Cpgi902	CpG island 902	1517 bp distal
Gm39683	predicted gene, 39683	within coordinates
Rr421242	regulatory region 421242	1234 bp distal
Rr421243	regulatory region 421243	432 bp distal
Rr421244	regulatory region 421244	within coordinates
Rr421245	regulatory region 421245	1559 bp proximal