rs256102236 SNP Detail

Summary

• ID
  rs256102236
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74795728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGTCCCTT TGTGGGTGAA
  GGCTAACTGC CCTCTGCTGC TAGCCGGTGC AGGCTTCATT TGATAAGGAA ATTCACACTC
  TTCCAAGGAC TGTTTGCCAT GTAAAATGAG GTTCTTGGAT AGGAAAAAAA ATTTTCTTAC
  TGCAAAAAGA AAGATTTCTT CCTGGTAAAA TAGTTGGGGT TTTTTTTTGG GGGGGGGGGA
  R
  ACGGTGTAGC CCCCCCATCA AATCACACAC CAGGATTCCC CTTGGAAAGA GGATCGGTTG
  CCATGGTAAC CAAACCTTCA GCAGTTTCCC TCAAGACAGT GGAGACTGGA AGGAAATCAG
  GAGATGGCGG AAGTCTACCG AAGAGGCCCC AGGTCCTCAC CACACCCACT GGTTCCTAGT
  AGCATTAGGG AAGCGGCCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss354489728	MGP_WTSI_2_74803441	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	A	G	G	G	A	A	A	A	A	G	A	G	A	G	A	G	G	G	G	G	A	G	G	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs256102236					SNP	G	G	G	A	G	G	G	A	A	A	A	A	G	A	G	A	G	A	G	G	G	G	G	A	G	G	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354489728	MGP_WTSI_2_74803441	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74795728 () rs orientation: forward

Symbol	Name	Function Class
Gm75057	predicted gene, 75057	72 bp upstream
Igs15	intergenic site 15	within coordinates
Rr559413	regulatory region 559413	573 bp distal
Rr559414	regulatory region 559414	829 bp distal
Rr559415	regulatory region 559415	within coordinates
Rr559416	regulatory region 559416	91 bp proximal