rs256093712 SNP Detail

Summary

• ID
  rs256093712
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:105612014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCAAGGCC GGTGACAGAC
  TTTCTCGGGT CGCCAGGCCC GAGCACCCCC CCTCCCCGAC CGCTCTTCCC ATTGGCCGAA
  GATACCCCTT CTGAGTTCTC ATTGGCTGCT GCACTTTTCC TCCGCCCCTA TCCCGGGCAT
  TGAGCGGCAG CAGCGGGGAA CGCCGCTCTA AGTCCCCACG CTGGAGCTGA GGCTCGGCTC
  W
  GCGCGGATAA GGGCGCGGAG CGCACTGAGA ACCCTACTTT CTCGTGAGCC CGAGCCCAGC
  AAATGGGCGA ATGACAAAGG AGAGCAAGGA CATGGACTGC TATCTGCGTC GCCTCAAACA
  GGAGCTGGTA AGATCGGAGC AGGAGCCTGG GGACAGGGAG GACTGCTCCA CCCAGACCTA
  GGTACCTGAC TTGCCCCCCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320863081	CHEV_3_105507616	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256093712					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105612014 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13661	CpG island 13661	within coordinates
Inka2	inka box actin regulator 2	mRNA-UTR
Rr367522	regulatory region 367522	within coordinates
Rr582756	regulatory region 582756	89 bp distal
Rr582757	regulatory region 582757	270 bp proximal
Rr582758	regulatory region 582758	771 bp proximal
Rr582759	regulatory region 582759	1775 bp proximal
Tssr31079	transcription start site region 31079	18 bp downstream
Tssr31080	transcription start site region 31080	1 bp downstream