rs256071685 SNP Detail

Summary

• ID
  rs256071685
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37367403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTACACTTG GACAGTTTTC AGAGTCATAA
  TTAATACTAA TTTTAAATAG ATTTCTGAAA CCCAGAAACG AATATTAGTC AGACAGATAG
  GCAGGCATTC CCGCGCTCAT ACACACAAAC ACACACACCG GGGTGGGGGG GGGGAGGAGA
  R
  GGGGGTGGAA GCTGCCTTTT AGACATTCCT GAATATCATT TGATCTGATG ACTATCAAAA
  GGCTGCTAAA CCTAAATAAA TCTTACATCA CCATGATTTA GGAATTTGGA TGTTCTAGTG
  TTAGAGGTTA TGGTTTATGA TAGGTTAAAG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320709115	CHEV_3_37212176	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256071685					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37367403 () rs orientation: forward

Symbol	Name	Function Class
Bbs12	Bardet-Biedl syndrome 12	Intron
Cetn4	centrin 4	808 bp upstream
Cpgi13095	CpG island 13095	340 bp distal
Gm43439	predicted gene 43439	within coordinates
Rr397646	regulatory region 397646	650 bp downstream
Rr575453	regulatory region 575453	845 bp distal
Rr575454	regulatory region 575454	688 bp distal
Rr575455	regulatory region 575455	within coordinates
Rr575456	regulatory region 575456	528 bp distal
Tssr28894	transcription start site region 28894	679 bp downstream
Tssr33051	transcription start site region 33051	789 bp upstream