rs256051840 SNP Detail

Summary

• ID
  rs256051840
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38034799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCAAAAA TTCTTTAAAA
  GGTCCTGAAA ATTGAGATTA ATTAGAATGT TTCCCATTCT ATCCTGGGGT TATGATGTTC
  TCTATTCTCA TCAGATGGAA GCATCCACAG CCTCATATGG ACTTAGAGGC CTCCAGGTGA
  GCAACCAGAA GTTGTATGGG AGGTGTGTGT GTGTTTCCCA CAGAGTTTCA GTTTGGGGGT
  K
  TCCCCCAGAG TTTCAGTTTT TGCTTTTTGA GGTGCCTCCA TACTGATTTC CAAAGTGGTT
  GAACTCATTT TGTCTGGCAC CAGAAGTGGG GTACCTTTTC CATGTATCAG TCTTTAGTAT
  TGTTATTTTG GGTTTTCTTA AATTTTCCTA TGAGGTTTTC TTCAATATTT CATTTCAGTT
  GCTATTGCCC CCCTTCCACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	PWK/PhJ	SEA/GnJ	SPRET/EiJ
ss357596751	MGP_WTSI_3_37879572	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	PWK/PhJ	SEA/GnJ	SPRET/EiJ
rs256051840					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357596751	MGP_WTSI_3_37879572	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38034799 () rs orientation: forward

Symbol	Name	Function Class
Gm20755	predicted gene, 20755	within coordinates
Rr575601	regulatory region 575601	1628 bp distal
Rr575602	regulatory region 575602	480 bp distal
Rr575603	regulatory region 575603	560 bp distal
Rr575604	regulatory region 575604	1177 bp proximal