rs255993839 SNP Detail

Summary

• ID
  rs255993839
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:63945740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAAGTGGAA GATTCAATGT
  GTCCAGCTGC CAACTGTTCC TGCACTAACT CTATGGCTGC CGACAATTTT TTTGCAGGAA
  GGAACCATTG GTCAAGCCAG ACAGGGGTGT CATCTTTCCA TGTAATTTTA TCTGTCTGGC
  ATGCAGGGAG AGCAATGGTC CTTATGAAAA ATGGGAGTTG TAACCTAAGC CTGCATGATC
  G
  ACCTTGGGAG GGATTTCGAT TGGCTCAGGC CTCCCTTGTC CAAATTTACC TAGTCCCTGT
  CCAGGGAGAT AACCCTGGGT GAGCATTTGT TGAGTAATGA CTTCATTGGG ACTGCACATA
  ATGACTCTCA TTTGAGAGAG AATATCTCTC CCCCACAAAT TAATAGGCAG ACCCGGGACA
  ACATAAGGCT GAATAGAGCC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	FVB/NJ	KK/HlJ	LEWES/EiJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	RIIIS/J	SJL/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358213180	MGP_WTSI_3_63842241	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	FVB/NJ	KK/HlJ	LEWES/EiJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	RIIIS/J	SJL/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255993839					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358213180	MGP_WTSI_3_63842241	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:63945740 () rs orientation: forward

Symbol	Name	Function Class
Rr577614	regulatory region 577614	1304 bp proximal
Rr577615	regulatory region 577615	1580 bp proximal
Tssr29383	transcription start site region 29383	980 bp upstream