rs255933667 SNP Detail

Summary

• ID
  rs255933667
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:67511722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGTTTCC AGTGACTAGA
  CAAGGAATTT CAGAAATGCG TCCTTAAAAA ACCAAGGGCG AGGGAGGTGA CCTGAGCTCA
  GCATCTAGAG AACTTGTTTG TGGAGAGAGA AGGAAGAGGT CAAAGCTGGG AGGAAAATTA
  CCTCCTGACT GAGAATTAAC AGGCCAACCC ATCTGGTCTG AGGTGCCGAG GAAGTCGGGG
  M
  ATCCTACAGG AAACCTACAA GCTAGGTTCG CTTCTCATCT CCCCCAGCTC CTTAAGCTCC
  ACCTTTTTGT ATTTGCCCGA CTTCCTCCGT TTGGTGACCA CCAAGACCAC CACACCAGCC
  ACTACCGCTA CCGAGACGAC AGCGATGACG GCAATGACGC CGGCGGTGAG GCGCTTCATG
  GAGAACTGGG GGGGCTTCTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321812330	CHEV_6_67484732	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255933667					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67511722 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17511	CpG island 17511	1330 bp distal
Cpgi17512	CpG island 17512	within coordinates
Gm42889	predicted gene 42889	within coordinates
Gm67034	predicted gene, 67034	1432 bp upstream
Rr368087	regulatory region 368087	1365 bp downstream
Rr631666	regulatory region 631666	1443 bp distal
Rr631667	regulatory region 631667	942 bp distal
Rr631668	regulatory region 631668	53 bp proximal
Rr631669	regulatory region 631669	496 bp proximal
Rr631670	regulatory region 631670	1047 bp proximal
Rr631671	regulatory region 631671	1048 bp proximal
Rr631672	regulatory region 631672	1220 bp proximal
Tacstd2	tumor-associated calcium signal transducer 2	mRNA-UTR
Tssr1869	transcription start site region 1869	1400 bp upstream
Tssr1870	transcription start site region 1870	1269 bp downstream
Tssr1871	transcription start site region 1871	920 bp downstream
Tssr1872	transcription start site region 1872	34 bp downstream
Tssr61254	transcription start site region 61254	1075 bp upstream
Tssr61255	transcription start site region 61255	within coordinates
Tssr61256	transcription start site region 61256	456 bp downstream
Tssr61257	transcription start site region 61257	947 bp downstream
Tssr61258	transcription start site region 61258	1045 bp downstream
Tssr61259	transcription start site region 61259	1090 bp downstream