rs255843672 SNP Detail

Summary

• ID
  rs255843672
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153084041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGTTAAGT GACTCACTCG
  AGGTCTAATC AGTCTCAGAT CAGTAGATGG AGTTTGTAGG ACAAGACCTG CCCGCACTGT
  CTCGTGGCAA TTCTTGCATT CATTCAGCAA AGAATTTATA TGCCCCCCCC CCTTTTTTTT
  AATGTCCCAG GCGCTGTTGT CTGTGCTGGT GGTGAATGAA ACAGATAAAT CTCATAGGAT
  Y
  CTTCATTTTA GGAAGACAGA CAATAAAAAG TTTTTAAGTG CGTGCAGAAT TTGTACAAGA
  TGATTCAAAC TGGGGTAATA AAAGATAACC AAGGACTCCT AAGAACCAGC GGAGGGATGC
  AACTTAAATG CAGTCGTGGA TCATCATTAT ATAATCCATC CCTTCTCTCA ATCCTTGAGT
  AGCTTGCATT CCTGACCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356168015	MGP_WTSI_2_153067857	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255843672					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356168015	MGP_WTSI_2_153067857	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153084041 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12482	CpG island 12482	229 bp distal
Plagl2	pleiomorphic adenoma gene-like 2	763 bp upstream
Pofut1	protein O-fucosyltransferase 1	Intron
Rr567588	regulatory region 567588	706 bp distal
Rr567589	regulatory region 567589	533 bp distal
Rr567590	regulatory region 567590	144 bp distal
Tssr20880	transcription start site region 20880	1195 bp downstream
Tssr20881	transcription start site region 20881	1178 bp downstream
Tssr20882	transcription start site region 20882	655 bp downstream
Tssr20883	transcription start site region 20883	518 bp downstream
Tssr20884	transcription start site region 20884	503 bp downstream
Tssr26895	transcription start site region 26895	767 bp upstream
Tssr26896	transcription start site region 26896	727 bp upstream
Tssr26897	transcription start site region 26897	710 bp upstream
Tssr26898	transcription start site region 26898	621 bp upstream
Tssr26899	transcription start site region 26899	397 bp upstream