rs255840328 SNP Detail

Summary

• ID
  rs255840328
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135621569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGAAGGAA GGAAGGAAGG
  AAGGAAGGAA AAGGAGAAAA CACACTTCCT GGGATGGGAT GAGACCAATC TGCAGAGTTC
  TTACTCTGCA AGCATGGGGC CCTGAGGTCA ATCCCCTGGA ACCCAGCTTT AAAAGGGAAA
  GGTGATTCAG TGGTTAAGAG CACTGGCTGC TCTTCCACAG GACCCAGGTT CAATTCCCAG
  S
  ACCCACATAG CTGCTTGCAA TTGCCTGAAA CCCCAGACCC AGGAGATCCG AAGCCTCTTC
  TGATCATTGA GGGCACCAGG CACACATGTG GTGTGCATAC ACACATGCAG GCAAAACACT
  CACTCACATG CCTATATGTA CATGCATGCA CACACATGCA CACTCACATG CACACGTGCA
  CACACGAGCA TCCACAGGCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363377908	MGP_WTSI_4_135450173	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	C	G	C	C	C	C	C	C	C	C	G	G	C	C	C	C	C	C	G	G	C	C	C	G	G	C	C	G	C	G	C	C	C	G	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255840328					SNP	G	G	G	G	C	G	C	C	C	C	C	C	C	C	G	G	C	C	C	C	C	C	G	G	C	C	C	G	G	C	C	G	C	G	C	C	C	G	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363377908	MGP_WTSI_4_135450173	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135621569 () rs orientation: forward

Symbol	Name	Function Class
Cnr2	cannabinoid receptor 2	1136 bp upstream
Rr602181	regulatory region 602181	1109 bp distal
Rr602182	regulatory region 602182	793 bp distal
Rr602183	regulatory region 602183	733 bp proximal
Rr602184	regulatory region 602184	1147 bp proximal
Rr602185	regulatory region 602185	1713 bp proximal
Tssr39650	transcription start site region 39650	922 bp upstream
Tssr39651	transcription start site region 39651	1126 bp upstream
Tssr39652	transcription start site region 39652	1156 bp upstream