rs255839043 SNP Detail

Summary

• ID
  rs255839043
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:88723165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGC TTTTTTTTTT AAATGTTTTT
  Y
  ATTCATATTT ATTTAGTTAT TTATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/2J	FVB/NJ	LEWES/EiJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	WSB/EiJ	ZALENDE/EiJ
ss916911696	MGP_WTSI_4_88804928	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	T	C	C	C	C	C	C	C	T	T	C	T	C	T	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/2J	FVB/NJ	LEWES/EiJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	WSB/EiJ	ZALENDE/EiJ
rs255839043					SNP	C	C	T	C	C	C	C	C	C	C	T	T	C	T	C	T	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916911696	MGP_WTSI_4_88804928	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88723165 () rs orientation: forward

Symbol	Name	Function Class
Gm13287	predicted gene 13287	1126 bp downstream
Gm13288	predicted gene 13288	603 bp upstream
Rr595111	regulatory region 595111	1664 bp distal
Rr595112	regulatory region 595112	1843 bp distal
Rr595113	regulatory region 595113	1697 bp distal
Rr595114	regulatory region 595114	1355 bp distal
Rr595115	regulatory region 595115	446 bp distal
Rr595116	regulatory region 595116	305 bp proximal
Rr595117	regulatory region 595117	555 bp proximal
Rr595118	regulatory region 595118	1051 bp proximal
Rr595119	regulatory region 595119	1214 bp proximal
Rr595120	regulatory region 595120	1556 bp proximal