rs255799142 SNP Detail

Summary

• ID
  rs255799142
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:109763529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCATATCG ACCTGATCAA
  GTTTCTCCAC GTTTGCTCTG TCTCATGCCC TTACTGCCGT ATTTGGAAAT GTTACTTCAT
  ATCGGCCTGA TCAAGTTTCT CTACGTTTGC TGTCTCATGC TTTTCAGTTG AACTCAGCTT
  CTATTTTTAA CTTCAATTGA GCGGGGTTAA AAGGAACGTC TCGCCCCCTG CTGGCGCCCG
  Y
  GGTCCCGGGA AGACCGGACA AAAGCCACCA CGTGGCTCAC ATCCTGGGCT CAGTTTTCTT
  AGGAACCCAG AGCCCCATGC TTGCTAGGCA AGGGCCCCAA CCCTGATCAA CGCTTTAGCA
  GGCGTCCTTT TGCTCAAGTC TAGAGCGTCA CTGGTGCCAA CTCTCCAACA CAGGGAGGAA
  TTGGCTTTGC TTAATTTTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322394788	CHEV_7_117307836	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255799142					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:109763529 () rs orientation: forward

Symbol	Name	Function Class
Gm72506	predicted gene, 72506	within coordinates
Gm72511	predicted gene, 72511	within coordinates
Rr1426	regulatory region 1426	within coordinates
Rr407345	regulatory region 407345	within coordinates
Rr653199	regulatory region 653199	1036 bp distal
Rr653200	regulatory region 653200	1057 bp distal
Rr653201	regulatory region 653201	within coordinates
Rr653202	regulatory region 653202	2 bp distal
Rr653203	regulatory region 653203	596 bp proximal
Rr653204	regulatory region 653204	603 bp proximal
Rr653205	regulatory region 653205	651 bp proximal
Rr653206	regulatory region 653206	674 bp proximal
Rr653207	regulatory region 653207	1728 bp proximal
Tssr2367	transcription start site region 2367	559 bp downstream
Tssr2368	transcription start site region 2368	1904 bp downstream
Tssr68492	transcription start site region 68492	1 bp downstream
Tssr74253	transcription start site region 74253	546 bp downstream