rs255782547 SNP Detail

Summary

• ID
  rs255782547
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:170671156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAAATTAGA GACAGTTTGT AAACAACCAA
  TAATCAAAGA AAAAATAATC AAAGATTTAC TATCTGGAAA AATCCCAGAC TCCTGGATAA
  CATCGGCCCT AGCAGAAAAC TTCCCAGGCT CTTCAAAgcc tgcagagcgc ctgctgagcg
  Y
  ctgctgagcg cctgctgagc gcctgctgag cgcctgctga gcgcctgctg agcgcctgct
  gagcgcctgc tgagcgcctg ctgagcgcct gcagagcgcc tgctgagcgc ctgctgagcg
  cctgctgagc gcctgctgag cgcctgcAGC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320113900	CHEV_1_172773718	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255782547					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170671156 () rs orientation: forward

Symbol	Name	Function Class
Atf6	activating transcription factor 6	Intron
Rr423131	regulatory region 423131	864 bp proximal
Rr423132	regulatory region 423132	974 bp proximal
Rr423133	regulatory region 423133	1830 bp proximal
Tssr14927	transcription start site region 14927	1797 bp upstream