rs255779593 SNP Detail

Summary

• ID
  rs255779593
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:167262273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTCACAG AAACTAAGCT
  AAGGTCATTC GGCTGGTGGC ATGAGCTGTT ACCCAGAATC ATCTCAGCAG TCTTAGTTTT
  AATATCCATA TATGAAAATT TTTTTACGTG GGCAGCCTTC TTGGCACACA TTAATTGTGC
  TGGAATTTTT GTTCTCAGCT AATGTGTGAG GCTTCCCTTG TTCGTTTAAT TTTATCTTGC
  Y
  TTATACCTGG CTTTCCTAGT TCCTTTGTAT AGTCTGAACC CCACAAGGTA CATCTCAGCA
  TACAGTAGGT CTCTACAGAG AACTTGGGCA TGTTAGCTGA ATGGAAGACC ACCTGCCTGC
  CATATGTGTT GCCCTAGGTT CCACCCCTGT ACAGAAGTAG ACAGATGCCT GAATGGGGGT
  GGGGAGGGGT GTCTCTCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356504888	MGP_WTSI_2_167245853	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255779593					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356504888	MGP_WTSI_2_167245853	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167262273 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12739	CpG island 12739	765 bp proximal
Gm74973	predicted gene, 74973	874 bp downstream
Rr397507	regulatory region 397507	1093 bp upstream
Rr570576	regulatory region 570576	1306 bp distal
Rr570577	regulatory region 570577	716 bp distal
Rr570578	regulatory region 570578	968 bp distal
Rr570579	regulatory region 570579	926 bp distal
Rr570580	regulatory region 570580	160 bp proximal
Rr570581	regulatory region 570581	1116 bp proximal
Rr570582	regulatory region 570582	1379 bp proximal
Slc9a8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	Noncoding-Transcript-Variant
Tssr21807	transcription start site region 21807	1339 bp upstream
Tssr21808	transcription start site region 21808	1353 bp upstream
Tssr21809	transcription start site region 21809	1684 bp upstream
Tssr27774	transcription start site region 27774	1098 bp downstream