rs255720646 SNP Detail

Summary

• ID
  rs255720646
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132292419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTCCAGGG CGCTTAATCC
  CTGTGCCATC TCTCCATCCT CTAGTCTTAG TCCTTAACCC TCTCTCAGCC TTCTGAGTGG
  TAGGTATTTC TGGCCTGTGA TCAGGTGCTG GGACACTCCA AGGGAACCCC TCTTTTCTGA
  GAGTGAGATG GAGCCATCTT AGCCTTAACT TCTGGGAGGC GATGGTGAGG ACGGGAGGCA
  R
  GGGCTTAGAG GTCTGTGAGC AGACCTCCAT TTGCTTTATT AGCTGTGTGA CTTTGGAGAA
  GTTATACACC TTCTCTGTGT ATAATCAATG TCATCTCCCC AGCAGACTTT CCTGGGAGGC
  TGAGCTAAAG TGTCTGGGAT GGAGCTAGGT CCCCGGGACC ACACCCACTG CAGAGGATGT
  TGATAACTGG GTGGCTGGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321334510	CHEV_4_132121023	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255720646					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132292419 () rs orientation: forward

Symbol	Name	Function Class
Ptafr	platelet-activating factor receptor	Intron
Rr601015	regulatory region 601015	1031 bp distal
Rr601016	regulatory region 601016	811 bp distal
Rr601017	regulatory region 601017	983 bp distal
Rr601018	regulatory region 601018	828 bp distal
Rr601019	regulatory region 601019	383 bp proximal
Tssr39381	transcription start site region 39381	1627 bp downstream
Tssr39382	transcription start site region 39382	1598 bp downstream
Tssr39383	transcription start site region 39383	1515 bp downstream
Tssr39384	transcription start site region 39384	1480 bp downstream
Tssr39385	transcription start site region 39385	1371 bp downstream
Tssr39386	transcription start site region 39386	1032 bp downstream
Tssr39387	transcription start site region 39387	1015 bp downstream
Tssr39388	transcription start site region 39388	898 bp downstream
Tssr39389	transcription start site region 39389	252 bp upstream