rs255673891 SNP Detail

Summary

• ID
  rs255673891
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:25110783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTCAGTGA CACACTGCTT
  GGTTAGCATG CATGGGCACC CCCCTCCCCC ATACACACAC ACTAGCAACA ACAAGAAAAA
  ACCAACACTA TCATACCTTG GCATATGAGT CATAGAAGTG AATCATTTTG AACTTAGAAA
  CCTGAGCCCT TAGCTAATAT TGATTGTTAT GTGGGATAGT GTGAAGATTA TGGGAACAAT
  R
  CATCAGTTTG TACCCCCAAG GTGGTTAAGG TTACAGTCTG CAGGGCAGGA GAGGTAGAAG
  AGGTGCCCCC AGTGTGAGAC AGACCATGAT GTACAAAGAG TCCTGACTGA GCTGTGCATA
  GTCAGCGTGG AGAGCAGAGG AGTGGAAAGG TGTTAGCCTT TGAATTAGAT GTGTGAGTAA
  AGTTGAGCTG GTTTGAAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322121670	CHEV_7_26196377	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255673891					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:25110783 () rs orientation: forward

Symbol	Name	Function Class
4732471J01Rik	RIKEN cDNA 4732471J01 gene	within coordinates
Cxcl17	C-X-C motif chemokine ligand 17	Intron
Rr643765	regulatory region 643765	1678 bp distal
Rr643767	regulatory region 643767	1776 bp distal
Rr643768	regulatory region 643768	within coordinates
Rr643769	regulatory region 643769	1718 bp proximal
Tssr2143	transcription start site region 2143	1439 bp downstream
Tssr2144	transcription start site region 2144	1589 bp downstream
Tssr2145	transcription start site region 2145	1607 bp downstream
Tssr2146	transcription start site region 2146	1625 bp downstream
Tssr2147	transcription start site region 2147	1668 bp downstream
Tssr71243	transcription start site region 71243	1449 bp downstream
Tssr71244	transcription start site region 71244	1474 bp downstream
Tssr71245	transcription start site region 71245	1487 bp downstream
Tssr71246	transcription start site region 71246	1499 bp downstream
Tssr71247	transcription start site region 71247	1544 bp downstream