rs255669298 SNP Detail

Summary

• ID
  rs255669298
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115214613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCAGCTT AGTCTAGCAT
  TGTAGAGAGC AACCTTAAGT TTCACAGACT CACTTAGAGG TAACTGGATT CTTAGGGCTG
  TTACCTACCC TCAAGTCAGG GTTGGTTTGT GCCTTTATCT CTCCAAATGG TATCCCTGGA
  AAACCAGGTC CTGTTGCTTT TTAAAATATT TTAAAGCACT TGACTTTCCT ATTTATGCTG
  R
  TTTGCTTAGA TTCTTCAGAG TTGATAGCAA AGTCCGGCAC TGAAAGCTTG TTCTTTTGAT
  GCTCATCTCT GTATCCTGTC TTTATTTCTC ATTCCCAACA ACTCATGTGT CTGACAGGAA
  AATCTACTAT TGAAGTAGAC ATTGTAGGTG GAAGAAAATG ACCAGGTCCT GAGCACCCCA
  CACCAGGTGC TGGCATGAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321915616	CHEV_6_115187670	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255669298					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115214613 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr636939	regulatory region 636939			793 bp proximal
Syn2	synapsin II			Intron
				Noncoding-Transcript-Variant
Tssr58295	transcription start site region 58295			1315 bp upstream