rs255662498 SNP Detail

Summary

• ID
  rs255662498
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153082216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAAATGGC TGCAACTCAC
  TCGGGCCTCA TTTTCACCTA CCACCCCTCC GCAACTTAGC AGCCTTTCCC CCAAGAGGAG
  AGGGTTAGAA ACCCAAGGCC AGACTTATCA CAGCCCCAGG CTGACAGGTG GAAAAACACA
  CAAGCCAGGA GTCGGTATGC TTGCAGGTGA AAGCCCCAAC TCCCAACACG GCCAGGAACG
  M
  GGCCCGCCAC CGCGCCACCG CCCCCTCCCC CCCCCCCCCC CGCGACCCCG ATCTGTTCCA
  AGCTGGACTG AAGCATGGGG CTGAAGTTGT AGGAAGTCTG GCCCTTAGGC CAGCGGAGAG
  ACTACCCTAT TTTGTAGTGT GAAATGTTAA ATTCTCCCCA CAATTGGAAG GTGGATGTAA
  AGAGTGGAGA CAAGAGACGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356167995	MGP_WTSI_2_153066032	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255662498					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356167995	MGP_WTSI_2_153066032	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153082216 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12482	CpG island 12482	531 bp proximal
Plagl2	pleiomorphic adenoma gene-like 2	Intron
Pofut1	protein O-fucosyltransferase 1	1237 bp upstream
Rr567587	regulatory region 567587	1530 bp distal
Rr567588	regulatory region 567588	within coordinates
Rr567589	regulatory region 567589	1120 bp proximal
Rr567590	regulatory region 567590	1660 bp proximal
Tssr20880	transcription start site region 20880	619 bp upstream
Tssr20881	transcription start site region 20881	633 bp upstream
Tssr20882	transcription start site region 20882	1156 bp upstream
Tssr20883	transcription start site region 20883	1206 bp upstream
Tssr20884	transcription start site region 20884	1311 bp upstream
Tssr26895	transcription start site region 26895	1047 bp downstream
Tssr26896	transcription start site region 26896	1062 bp downstream
Tssr26897	transcription start site region 26897	1106 bp downstream
Tssr26898	transcription start site region 26898	1201 bp downstream
Tssr26899	transcription start site region 26899	1413 bp downstream