About   Help   FAQ
rs255649850 SNP Detail
Summary
  • ID
    rs255649850
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr3:108322906 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCCCACTTGA TCTCCCAGTA
    GTGGCGACGG TGGCAGCAGC AGCAACAGCA GTAGCAGCGG CAGCAGCGGC GTTGGGAGGG
    GGGCGCTGGC AGCCCGGCTC CGCATCTCTC CCTGTTCCCG GCCAGCCGGG TCAACAGCCG
    CGGCGGCTCT TCCTCCGGCT CCTGCCGGCC CCGCCGCGCC TCATGCCCGG GCCGGGGCGC
    S
    GGTCCCCGGG GGCCACCTGT ACGTCCCACT GGGCCTGCAC CCAGATGGCT CGGCGGGGCC
    GCGCTCTTAG CCCACGATGC GCCGGGCTCC CACCACTCTC GAAGCCGGGC CCGCTCCCGA
    GTCGCCGCGA CCACTGCGGG TTCACGCTGC GCTTCCACCT GCGCTCTGAG CGTTCTCTAC
    CTGCGCCCGC GGGCCGCGAG                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ss359164307 MGP_WTSI_3_108218508 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G C G G C G G G G C G G G G C C G G G C C G C G G G C G G G C G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
rs255649850 SNP G G G G G G G G G G G G G G G G G G G C G G C G G G G C G G G G C C G G G C C G C G G G C G G G C G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss359164307 MGP_WTSI_3_108218508 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:108322906 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Celsr2 cadherin, EGF LAG seven-pass G-type receptor 2 Intron
mRNA-UTR
Cpgi13701 CpG island 13701 within coordinates
Gm52630 predicted gene, 52630 474 bp upstream
Rr583231 regulatory region 583231 within coordinates
Rr583232 regulatory region 583232 467 bp proximal
Rr583233 regulatory region 583233 509 bp proximal
Rr583234 regulatory region 583234 538 bp proximal
Tssr31250 transcription start site region 31250 389 bp upstream
Tssr35143 transcription start site region 35143 421 bp downstream
Tssr35144 transcription start site region 35144 462 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
03/18/2025
MGI 6.24
The Jackson Laboratory