rs255592324 SNP Detail

Summary

• ID
  rs255592324
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135000213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAG CTGGGGGCGT GGCCTCAGGC
  R
  AGGAAGACAG CGGAGCGCTC TAGCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321351518	CHEV_4_134828817	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255592324					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135000213 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	142 bp upstream
Cpgi15068	CpG island 15068	within coordinates
Rr398589	regulatory region 398589	within coordinates
Rr601975	regulatory region 601975	99 bp distal
Rr601976	regulatory region 601976	1224 bp distal
Rr601977	regulatory region 601977	1178 bp distal
Rr601978	regulatory region 601978	432 bp distal
Rr601979	regulatory region 601979	89 bp distal
Rr601980	regulatory region 601980	within coordinates
Rr601981	regulatory region 601981	206 bp proximal
Rr601982	regulatory region 601982	1642 bp proximal
Tssr39607	transcription start site region 39607	720 bp downstream
Tssr43972	transcription start site region 43972	1734 bp upstream
Tssr43973	transcription start site region 43973	185 bp upstream
Tssr43974	transcription start site region 43974	155 bp upstream
Tssr43975	transcription start site region 43975	129 bp upstream
Tssr43976	transcription start site region 43976	110 bp upstream
Tssr43977	transcription start site region 43977	83 bp upstream