rs255574816 SNP Detail

Summary

• ID
  rs255574816
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113579732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGAGATGCA TAAGTTAAAA ATGTAAAAAT
  TTTATACCTT GGTACTGAGT Ggttgtgggg catgccttta atctcagcac tctagaagca
  gaggcaggta gatctctgag ttggaggcca gcctgaccta caaagataaa gtgccaCGGT
  K
  TTttaggttt ccgttgctgt gaagaggcac catgaccaag gcaactctta caaaggcaaa
  catttaatca gggctgtctt acgatttcaa aggttcagcc cattatcatc acggtggtaa
  agcacggtat ccagcaggcc aagttggtgt                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321911091	CHEV_6_113552765	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255574816					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113579732 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17850	CpG island 17850	1604 bp proximal
Gm67049	predicted gene, 67049	within coordinates
Gm67050	predicted gene, 67050	1791 bp downstream
Rr379958	regulatory region 379958	1392 bp downstream
Rr636548	regulatory region 636548	1691 bp distal
Rr636549	regulatory region 636549	1511 bp proximal
Rr636550	regulatory region 636550	1735 bp proximal
Rr636551	regulatory region 636551	1954 bp proximal
Tssr58230	transcription start site region 58230	1978 bp upstream