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rs255553427 SNP Detail
Summary
  • ID
    rs255553427
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr6:72592335 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTTCCTGCCT CCAGATGGAA
    GATGGTTGGT ATAGAAGCTA GAAATGGTAA ACTATCTTAA GCCTGGAAAA GGGGGAAGAG
    GTCTACATAT CAAGAGGCTG GGAATGATCT GAGTTCCAAG TTAGGGGAGG GGAATTACAG
    TTAGGTCAGG TCATGACTCA CGTCCAACTT GGCACTTTAC AGCAGAACTG AGAGGAAACA
    R
    GTCACATGAT GAAAACACCT GATTTACAAA ACTTAGTTTT ATAAGCCCCA GCAGGGTCTA
    TGGAAAAAAC AAGATGATCT TAAAATTCTC AAAGCTCACA GGCAGATGAG TGACAGATAG
    CTGTCCATGA ACAAAGAACT TAGGGTCCTG GAAATCCCAG TCCCCTCTTA CCTTTCGTTT
    GTTGTGGTAA GCAATATAGA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss368753270 MGP_WTSI_6_72565346 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A G A A A G A A A A G G A A A A G G A A A A A G G G A A A A A G A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs255553427 SNP A A A A A A A A A A A A A A A A A G A A A G A A A A G G A A A A G G A A A A A G G G A A A A A G A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss368753270 MGP_WTSI_6_72565346 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:72592335 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi17549 CpG island 17549 786 bp proximal
Gm20536 predicted gene 20536 within coordinates
Gm67593 predicted gene, 67593 1421 bp upstream
Rr399708 regulatory region 399708 1290 bp upstream
Rr632243 regulatory region 632243 within coordinates
Rr632244 regulatory region 632244 931 bp proximal
Rr632245 regulatory region 632245 1384 bp proximal
Rr632246 regulatory region 632246 1476 bp proximal
Rr632247 regulatory region 632247 1638 bp proximal
Tgoln1 trans-golgi network protein Intron
Tssr57152 transcription start site region 57152 1503 bp upstream
Tssr61478 transcription start site region 61478 1373 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory