rs255499229 SNP Detail

Summary

• ID
  rs255499229
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132243838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGTTGAAG GCCACACTGG
  GCTACAGAGT GATTTATCTC GGAAACTCAG TAAGTGCTAG TATCAAAAAT AAATAAATAA
  GTAAATAAAC AAGTAAGTAA GTAAATAAAT AAATAAATAA AAAGTGAAAG AGAAGCCTGT
  TTGTTGTTTA AAGAACAGAA AGGAACAACT ATTGATTTCC CTACTTTAGT CCCCTGAGTA
  R
  GTGGCTTTCC AGAGTTGTTT TTTGTTTGTT TGTTTGTTTG TTTGTTTGTT TTTCGAGACA
  GGGTTTCTCT GTATAGCCCT GGCTGTCCTG GAACTCACTT TGTAGACCAG GGTGGCCTCA
  AACTCAGAAA TTCACCTGCC TCTGGCTCCC AAATTCTGGG ATTAAAGGCG TGCACCACCA
  CTGCCCAGCT TGTATTTATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321333977	CHEV_4_132072442	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255499229					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132243838 () rs orientation: forward

Symbol	Name	Function Class
Gm68741	predicted gene, 68741	within coordinates
n-TAagc8	nuclear encoded tRNA alanine 8 (anticodon AGC)	448 bp downstream
Rr377207	regulatory region 377207	212 bp downstream
Rr600995	regulatory region 600995	1738 bp distal
Rr600996	regulatory region 600996	1237 bp distal
Rr600997	regulatory region 600997	1576 bp distal
Rr600998	regulatory region 600998	499 bp distal
Rr600999	regulatory region 600999	1247 bp proximal
Tssr39372	transcription start site region 39372	699 bp downstream
Tssr43681	transcription start site region 43681	1093 bp upstream