rs255488772 SNP Detail

Summary

• ID
  rs255488772
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90381858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCTCCAA TTCAGAGATC
  TGCCTGCCTG TACCTCCCCA GTGCTGGGAT TAAAGGCCTG CACCACAAGG TTGGGTTTAA
  AGATGTATTT TATGTTAAGT TATGTGTGTA TATGTATACA TGCTTATGCG TACAATGTGC
  TAGAGGGCAG AAGAGATTGG CCGAACTTTA GTCCTGAAAG AACAGTGCGT GCTCTTGACT
  R
  CTGAGCCTTT TCTGAGCCAC TCCCAATTAA AAGAAAACCT AGGGCTGGAG AGATGGCTCA
  GAAGTTAAGA GCACTGACTG CTCTTCCAGA GGTCCTGAGT TCAATTCCCA GCAACCACAT
  GGTGGCTCAG GACCATATAT CTGATGCCCT CTCCAGGCCT GCAAACATAC ATGCAGGCAA
  AATACTGTAT ACATAATCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358832990	MGP_WTSI_3_90278473	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255488772					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358832990	MGP_WTSI_3_90278473	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90381858 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13463	CpG island 13463	1294 bp proximal
Ilf2	interleukin enhancer binding factor 2	1575 bp upstream
n-TMcat11	nuclear encoded tRNA methionine 11 (anticodon CAT)	1309 bp downstream
Rr397811	regulatory region 397811	1345 bp upstream
Rr580369	regulatory region 580369	1836 bp distal
Rr580370	regulatory region 580370	141 bp proximal
Rr580371	regulatory region 580371	1106 bp proximal
Rr580372	regulatory region 580372	1442 bp proximal
Rr580373	regulatory region 580373	1607 bp proximal
Rr580374	regulatory region 580374	1865 bp proximal
Tssr30205	transcription start site region 30205	1570 bp upstream