rs255475602 SNP Detail

Summary

• ID
  rs255475602
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:34074479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGCG GTTTAACGGT CTCGGGGCCC
  R
  GGCTCCGTTA TGTTTGGAAA CAAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320700966	CHEV_3_33919252	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255475602					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34074479 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13066	CpG island 13066	within coordinates
Fxr1	FMR1 autosomal homolog 1	Intron
Gm43077	predicted gene 43077	448 bp upstream
Rr575095	regulatory region 575095	543 bp distal
Rr575096	regulatory region 575096	212 bp distal
Rr575097	regulatory region 575097	within coordinates
Tssr28785	transcription start site region 28785	447 bp downstream
Tssr28786	transcription start site region 28786	414 bp downstream
Tssr28787	transcription start site region 28787	404 bp downstream
Tssr28788	transcription start site region 28788	391 bp downstream
Tssr28789	transcription start site region 28789	367 bp downstream
Tssr28790	transcription start site region 28790	248 bp downstream
Tssr28791	transcription start site region 28791	220 bp downstream
Tssr32968	transcription start site region 32968	518 bp upstream