rs255473780 SNP Detail

Summary

• ID
  rs255473780
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152632553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCCGAACT GGCTGAGTGG
  TGTTCTGAAC ACTGTTTTGG TTGGGATGAG CCTTAGTTCC CTGGGATTGT TAGTAAGGTG
  AATGTCATTG GTCAAGTGGC TCACGAGAAA CACTTCAGAC TGTTCTGAGA ACCATCTAAG
  TCACTCATCG AATAGTAGTT AATGATAGAT ACAGCTAATT TTCCGAGATG ATGGCATTCA
  C
  GAATAGGTTG GAAATAGGTT GGCCTGTGTT TGTTGAATGA AAGATACACA CATACATGAG
  TCTCTTATAA CTGGTAGAGG AATCTCCTTC ATACTTCCTA TCTAAAAATC CTCTGCAAAG
  AAAGACACAT GGAGAGCAGG GTGGGGTTTA GTGGATGGTT TTTTTTTTCC TACTTCTTTA
  GAGACCAAAT ACTGGATTGA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321029229	CHEV_3_152589880	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255473780					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152632553 () rs orientation: forward

Symbol	Name	Function Class
Gm16213	predicted gene 16213	within coordinates
Gm46830	predicted gene, 46830	within coordinates
Gm66995	predicted gene, 66995	1978 bp upstream
Rr587626	regulatory region 587626	370 bp distal
Rr587627	regulatory region 587627	1534 bp proximal
Rr587628	regulatory region 587628	1989 bp proximal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron
Tssr32427	transcription start site region 32427	1973 bp upstream