rs255467673 SNP Detail

Summary

• ID
  rs255467673
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:120016555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGCGGGGAG AGGCGGGTGA CAAGCATGGG
  AGGAGGTCGA GTTCGAAGAT ATTCTACATC TTTAATCTTT GATTACAAAC TTGAGAGGAC
  ATAGTTGACT TTTGCCTCTA TATTTGAGTA AAAATTATTT TCCTTTTGTT TTCTTATACC
  M
  TGCCTCGGTG GCTCAGTAAA ACATCCCCTT TCTGTACTAC ACTTGCATAT GTACACATAT
  GTAATTTATA CCAAGGCGCG GATCTCCGGA AACCTAGATC CGTGCAGTTT ACAGTAATGG
  AATTCTTCTC TTCAAAATAT CTTTAGTGCT                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321929674	CHEV_6_119989612	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255467673					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:120016555 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17916	CpG island 17916	613 bp distal
Cpgi17917	CpG island 17917	168 bp proximal
Gm66353	predicted gene, 66353	within coordinates
Rr399863	regulatory region 399863	614 bp downstream
Rr399864	regulatory region 399864	10 bp upstream
Rr637759	regulatory region 637759	1445 bp distal
Rr637760	regulatory region 637760	762 bp distal
Rr637761	regulatory region 637761	within coordinates
Rr637762	regulatory region 637762	191 bp proximal
Tssr58518	transcription start site region 58518	307 bp upstream
Tssr62751	transcription start site region 62751	1714 bp upstream
Tssr62752	transcription start site region 62752	1680 bp upstream
Tssr62753	transcription start site region 62753	1618 bp upstream
Tssr62754	transcription start site region 62754	1544 bp upstream
Tssr62755	transcription start site region 62755	1455 bp upstream
Tssr62756	transcription start site region 62756	1231 bp upstream
Tssr62757	transcription start site region 62757	1039 bp upstream
Tssr62758	transcription start site region 62758	958 bp upstream
Tssr62759	transcription start site region 62759	895 bp upstream
Wnk1	WNK lysine deficient protein kinase 1	922 bp upstream