rs255438072 SNP Detail

Summary

• ID
  rs255438072
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:26692660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACACTCATG TAGTGAGTTC
  TGAGCCAGCC TGAAACAGAG TGAAACAAGG TAGATATGTG GATAGATAGA TAGATGGGAG
  AGTGGACAGA TGGGGACACA CACACACACA CACACACACA CACACACACA CACTGTATAA
  TTGTACTTCC TAATACTGGG ACCCTTTAAT ACAGTTCCTC ATGTAGTGGT GACCCCCCCC
  M
  CACACACACA CACAATAAGA AATAATAAAT TACTTTTGTT GCCACTCCAT ACCTGTAAAT
  TTTCTACTGC TATGAACTGT ACTGTAAATA CCAGATATGC ACAGTATCTG ATATGTGACC
  CCTGTGAAAG GGTTGCTTAA ACCTCAAAAG GTCTGAGACC CACACGTTGA GAACTGCTTA
  TCTAAGTAGA AGCCATGACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	MA/MyJ	MOLF/EiJ	SJL/J	ST/bJ	WSB/EiJ
ss357327938	MGP_WTSI_3_26537433	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	MA/MyJ	MOLF/EiJ	SJL/J	ST/bJ	WSB/EiJ
rs255438072					SNP	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357327938	MGP_WTSI_3_26537433	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26692660 () rs orientation: forward

Symbol	Name	Function Class
Gm65182	predicted gene, 65182	957 bp upstream
Gm65438	predicted gene, 65438	297 bp downstream
Rr574324	regulatory region 574324	702 bp proximal
Rr574325	regulatory region 574325	936 bp proximal
Rr574326	regulatory region 574326	1645 bp proximal
Spata16	spermatogenesis associated 16	Intron
Tssr28597	transcription start site region 28597	874 bp downstream
Tssr28598	transcription start site region 28598	851 bp downstream