rs255401659 SNP Detail

Summary

• ID
  rs255401659
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119494057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTAAAAG AGCCAAATTA
  AGAAGTAAAA GTAAGCCTGA CATGGTAGTC CATACCTTTA TTCCAGCTCT GGGGAAGCAG
  GGGTATTTGT ATCTCTGGGA GTTCCAGGCC ATAATTTCCT GGTAGCTATC TAAGTATAGG
  TATATAGGTA TAAAGGTGTG TGTGTGTGTG TGTATGTGTG TGTGTGAGAG AGAGGGCGGG
  R
  GGGAGCACCA CAGTCCCTCT AATCACGTTC AACTTTCATC CCATAGAAAG GTTGAGGCCC
  CTCACTCTTC CAATAAAACA GTCTCAGCCT TTTGAGTCTG TCTCTTCGCC TAATTTTTCT
  TATAAGAACT GTGAAAATCT GTTTCCCAGA GACAATTTGG GGGGTTGGTT GGTTGGTTGG
  TTTTTGCTTT TTCCTTTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	JF1/MsJ	LG/J	MOLF/EiJ	PL/J	PWK/PhJ	QSi5/Ianm
ss355434337	MGP_WTSI_2_119489312	EVA_MGPV3	EVA_MGPV3	f	SNP	G	A	G	G	G	G	G	G	G	G	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	JF1/MsJ	LG/J	MOLF/EiJ	PL/J	PWK/PhJ	QSi5/Ianm
rs255401659					SNP	G	A	G	G	G	G	G	G	G	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355434337	MGP_WTSI_2_119489312	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119494057 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12124	CpG island 12124	623 bp distal
Gm75025	predicted gene, 75025	1528 bp downstream
Gm75032	predicted gene, 75032	1517 bp upstream
Ndufaf1	NADH:ubiquinone oxidoreductase complex assembly factor 1	755 bp upstream
Rr397235	regulatory region 397235	604 bp downstream
Rr563557	regulatory region 563557	789 bp distal
Rr563558	regulatory region 563558	265 bp distal
Tssr25825	transcription start site region 25825	741 bp upstream