rs255373801 SNP Detail

Summary

• ID
  rs255373801
• Variation Type
  SNP
• Alleles
  C/G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:48532300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGAAAAAG AAGCTCGGCA
  CCCCAACTAT GCCTTTCCGT GCTCGAGTTC TTTTGCACCC GCCTTTGCCT TGTAACATTT
  CCCCTTTTCT GATCACTCTG GGATCGCCCG GACCGCATGT TGCCCAACCC GCTTACATCT
  AAGATTGTGG TTTGGGCTCT TCCTGCTTTT AACTTTGTAT CTTCAGCCTC CAGAAGGACT
  B
  GGGGCCACGC AGTCCAAGTC CCATCACTGA GCTTGGCCAT CAGTAAGCTA ACCATCACTG
  ACTTCAAGGG AGATACTGTG TTTTCCTGGC GGTGGTTAGG GCGTGGATGC CATAACACCG
  CCCCGGGATC CAGGTGCAAA GGGAATGCAC ACTGGGCAGA GGTCTAGGTG ATGAGCCAGG
  GTCTTCTTCC TGAGGGTGGC                                            
  
  B = C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss371266137	MGP_WTSI_7_56137922	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs255373801					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371266137	MGP_WTSI_7_56137922	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48532300 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19137	CpG island 19137	79 bp distal
E2f8	E2F transcription factor 8	956 bp upstream
Gm2788	predicted gene 2788	within coordinates
Rr400335	regulatory region 400335	1305 bp downstream
Rr400336	regulatory region 400336	602 bp downstream
Rr646937	regulatory region 646937	1522 bp distal
Rr646938	regulatory region 646938	1168 bp distal
Rr646939	regulatory region 646939	967 bp distal
Rr646940	regulatory region 646940	466 bp distal
Tssr66768	transcription start site region 66768	1187 bp downstream
Tssr66769	transcription start site region 66769	686 bp downstream
Tssr72630	transcription start site region 72630	1562 bp upstream
Tssr72631	transcription start site region 72631	1522 bp upstream
Tssr72632	transcription start site region 72632	1502 bp upstream
Tssr72633	transcription start site region 72633	933 bp upstream
Tssr72634	transcription start site region 72634	881 bp upstream
Tssr72635	transcription start site region 72635	198 bp upstream
Tssr72636	transcription start site region 72636	783 bp downstream