rs255334677 SNP Detail

Summary

• ID
  rs255334677
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132571368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGAAGCAT TAGGGTTACC
  ATCTTCCTCT AAGCCATTAG CTTGCTGGTT GTAATGGTTT TGTCTATTGA GTGCTTATGG
  GGAAGTATGT ATTTCATATG GATCAGTTCA CTTGGTATTC CCAAAACTCA AGACAGATTG
  ATTCCAGAAG AGAGGCTCTA GCCTCACCTT ACAAGGAGTG GTATTCGAAC CTGAGTCTAT
  R
  TAAAGCCAAA AGCCAGGCTC TACTAGTCCC ATATGTTTCT GACAACATAC CATTCCTTCG
  TATGCAGTGG ATGGTCCTTT TTTCACTTTT GCAGAAAGAT GGGATGATGA CTTCACAGTT
  TTTAAAAGAA ACAAATGGTT GGAGGGTGTG GCAGCACATA TCTGAAATTC CATCTGCCTT
  TGCTTCCTGA GATACAGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321336785	CHEV_4_132399972	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255334677					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132571368 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14975	CpG island 14975	592 bp distal
Ppp1r8	protein phosphatase 1, regulatory subunit 8	888 bp upstream
Rr367719	regulatory region 367719	785 bp downstream
Rr367720	regulatory region 367720	598 bp downstream
Rr601096	regulatory region 601096	945 bp distal
Rr601097	regulatory region 601097	933 bp distal
Rr601098	regulatory region 601098	398 bp distal
Rr601099	regulatory region 601099	596 bp distal
Tssr43718	transcription start site region 43718	1112 bp upstream
Tssr43719	transcription start site region 43719	873 bp upstream