rs255264986 SNP Detail

Summary

• ID
  rs255264986
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:74521380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAAAATCC ATAAAAGGAA
  AACATATTTT TCTTTGCAGA AGATCTAAAT GACAAGTTTG CTTTGCTCTC TCCTCTTTTT
  ATTTTTATTT TTTCTTCTGG CCCGGTTTTC TAAAACTTGT GGAGTCCGGG GATCAGAGTT
  TTCCCTTTTC TTTTGAAAAA AAATTTCTTT TTCCCTTCCT TTCTCTCTGC CCTGTGTTAT
  Y
  AGGGGAAGGA AATCTGGCTT TAGCTGTTTC TGGGAGCCGG AGAGACGCTT TCGCGAATAG
  GGAACGGCTG GCGAAGGATT ATCTCCAAGC TAGGAAGCTC CCAGCGGCCG GTCCTCAAAG
  GTCAGGGTGT GGTTACTCTC AGAGTCAAGG CTCCAGGAGC TCGTGGGTGC CGATTCCCCC
  CCCCCCTTAG TTCTAGCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354484904	MGP_WTSI_2_74529093	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255264986					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354484904	MGP_WTSI_2_74529093	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74521380 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11796	CpG island 11796			131 bp proximal
Cpgi11797	CpG island 11797			1305 bp proximal
Gm28309	predicted gene 28309			within coordinates
Gm74919	predicted gene, 74919			within coordinates
Hoxd10	homeobox D10			Intron
				Splice-Site
Igs15	intergenic site 15			within coordinates
Rr44605	regulatory region 44605			621 bp proximal
Rr373365	regulatory region 373365			272 bp downstream
Rr559350	regulatory region 559350			531 bp distal
Rr559351	regulatory region 559351			within coordinates
Rr559352	regulatory region 559352			728 bp proximal
Rr559353	regulatory region 559353			1049 bp proximal
Tssr18406	transcription start site region 18406			824 bp upstream
Tssr18407	transcription start site region 18407			849 bp upstream
Tssr18408	transcription start site region 18408			877 bp upstream
Tssr18409	transcription start site region 18409			905 bp upstream
Tssr18410	transcription start site region 18410			929 bp upstream
Tssr18411	transcription start site region 18411			1015 bp upstream
Tssr24622	transcription start site region 24622			722 bp downstream