rs255264386 SNP Detail

Summary

• ID
  rs255264386
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31658165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTAAAAAA GAAAAAAGAA
  AAAGAAAGAA AGAAAAAAAT ATGTCTGATA TATTCTTGTA CACTTTATCA GGGAGAGGCC
  CAGCTTGAGT GCTTGGAGTG GTTTCATTGT GCATCTTGGA TTAGACCAAA GTAAATTCCA
  AGGCAGCAGA CATCGTTTGC ACAGAGGAAA CCAGAACCCA CTGCAGGTGA GCACATCTGT
  Y
  GTCAGGGCGT TAGAGTCTCT GACACCAAAG AAACATTAGT TTGCCCATTT GCACAGTAGG
  GATCTTTCAT ACCATTACTT TAATTTTAAA AATTGATTAT TATTTTTACT GATGTGTAAG
  TACCTGTGTG TGGGTATAGG GACTCGTACC AGTTTGTATC CAGAGGTCAG AGGCACCAGA
  TCCCCAGAAG CTAGAGATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357445748	MGP_WTSI_3_31502938	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255264386					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357445748	MGP_WTSI_3_31502938	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31658165 () rs orientation: forward

Symbol	Name	Function Class
Rr574917	regulatory region 574917	464 bp distal
Rr574918	regulatory region 574918	577 bp distal
Rr574919	regulatory region 574919	451 bp distal