rs255242496 SNP Detail

Summary

• ID
  rs255242496
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141296407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGTGGGAA ATAGTGTAAA
  TATGTTCTTT TCATAGAAGG TCCATCAGCC ATGGTAATGT TATACTGCAT TCAAATCGTT
  ATCTATGAGC TCTTGTGAAC AATAAGAGCT CCTGTTTCTA TAAAATCATT TGAGATATTC
  TAAGCTCATA TTTTAGAAGA TCAGTCAGAG AGGGCAGAGG TCCTCTGTTT AGGGCACTTT
  Y
  TATTATCCAA CAAAACATCA AAAGTAATTG GAATTGTATA AATATTCAAA GGGAACCAGA
  CTAGGGGCAC TCTTGGATGT CTTCCCTGAG TACCGAGCTT GGAAAAAAGC TCATTCCAAG
  GGTCTGCAGC CTCGTGGGCT GGAGACTGCA TTACTACAAC ACTTCTGCCT TATGTACAGT
  GGTGCTCAAT AAATATCCGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320993583	CHEV_3_141253610	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255242496					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141296407 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr586339	regulatory region 586339			777 bp distal
Tssr32042	transcription start site region 32042			1418 bp upstream
Unc5c	unc-5 netrin receptor C			Intron
				Noncoding-Transcript-Variant