rs255213590 SNP Detail

Summary

• ID
  rs255213590
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:82937291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAAGTTCC AGGTAGAAAG
  AAAAACTCCT CCTCAAACGA TATAAGCAAT AATACATTCT GTTACCATAA ATGAAGTTAC
  AATCAAGTAA TCAGATGTGA TTAAACTGTT TACCTCCTAG CCTCCATTTT CAAACCCTCA
  AGCCATTTCT GGATTTATTC GGATTCCTTG TCACGTTAGG ACAGTGTGAC TAATACCAGT
  R
  GATGACTCTC CTGTGGAACA ATCTGATTAA ACTGAAAACT TGCAGATTAT ACATCCAGAG
  AAAAAACCAT AATAGAGTAA AGAATAAAGT GTAGAAATAC TTATAAGCAA TTTCCTTTTT
  CTTTTTTTAT TTATTTGTTT TTAGATTTTA GAAGTAAATC AGACTGCAGC TATTTGCATA
  CCTTTCTTTT TCCGTTTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358676677	MGP_WTSI_3_82833906	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255213590					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358676677	MGP_WTSI_3_82833906	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82937291 () rs orientation: forward

Symbol	Name	Function Class
Fga	fibrinogen alpha chain	Intron
Rr375250	regulatory region 375250	within coordinates
Tssr917	transcription start site region 917	1714 bp upstream
Tssr29661	transcription start site region 29661	1436 bp downstream
Tssr29662	transcription start site region 29662	1387 bp downstream
Tssr29663	transcription start site region 29663	1370 bp downstream
Tssr29664	transcription start site region 29664	887 bp downstream
Tssr29665	transcription start site region 29665	848 bp downstream
Tssr29666	transcription start site region 29666	812 bp downstream
Tssr29667	transcription start site region 29667	769 bp downstream
Tssr29668	transcription start site region 29668	214 bp upstream
Tssr29669	transcription start site region 29669	258 bp upstream
Tssr29670	transcription start site region 29670	302 bp upstream
Tssr29671	transcription start site region 29671	846 bp upstream
Tssr29672	transcription start site region 29672	949 bp upstream
Tssr29673	transcription start site region 29673	977 bp upstream
Tssr29674	transcription start site region 29674	1026 bp upstream
Tssr29675	transcription start site region 29675	1036 bp upstream
Tssr29676	transcription start site region 29676	1046 bp upstream
Tssr29677	transcription start site region 29677	1063 bp upstream
Tssr29678	transcription start site region 29678	1142 bp upstream
Tssr29679	transcription start site region 29679	1186 bp upstream
Tssr29680	transcription start site region 29680	1209 bp upstream
Tssr29681	transcription start site region 29681	1311 bp upstream
Tssr29682	transcription start site region 29682	1334 bp upstream
Tssr29683	transcription start site region 29683	1377 bp upstream
Tssr29684	transcription start site region 29684	1402 bp upstream
Tssr29685	transcription start site region 29685	1443 bp upstream
Tssr29686	transcription start site region 29686	1509 bp upstream
Tssr29687	transcription start site region 29687	1607 bp upstream
Tssr29688	transcription start site region 29688	1631 bp upstream
Tssr29689	transcription start site region 29689	1657 bp upstream
Tssr29690	transcription start site region 29690	1687 bp upstream
Tssr29691	transcription start site region 29691	1733 bp upstream
Tssr29692	transcription start site region 29692	1749 bp upstream
Tssr29693	transcription start site region 29693	1780 bp upstream
Tssr29694	transcription start site region 29694	1813 bp upstream
Tssr29695	transcription start site region 29695	1839 bp upstream
Tssr29696	transcription start site region 29696	1852 bp upstream
Tssr29697	transcription start site region 29697	1876 bp upstream
Tssr33800	transcription start site region 33800	1118 bp downstream
Tssr33801	transcription start site region 33801	1463 bp downstream
Tssr33802	transcription start site region 33802	1599 bp downstream