rs255209060 SNP Detail

Summary

• ID
  rs255209060
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:106697762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAGGTCT GACACACCAA
  TCTGAGTTCT GGTGAACTTT ACAGTAATTT GAGTGATATT TCCTGGCCAT AGAACAGTGC
  TTCTCAATTG AAGCAGCAAC TACAAAATAC CCGTGGGTCT GTTTCTGTGT ATGTGTCCCC
  ACCGTTTGAC CACAAACTAT ACTACTAAAC CATACTGACC AAGCCAGCAT GGTACTGGAA
  Y
  GAAACCATAC TTGTAGATCA ATATAGCATA GTAGAGGACA CAGAGATAAA CTTGTGTAGG
  ATTGAATATC TACTTTTGGA CAAAGGTGTA TCAAAACATG AACTAGAAAA ACAAAAATGC
  AGCTGGAGAG ATCGCTCAGC AGTTAAGAGC ACTGACTGCT CTTCCAGAAG TCCTGAGTTT
  AATTCCCAGC AGCCACATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359133017	MGP_WTSI_3_106593364	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255209060					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359133017	MGP_WTSI_3_106593364	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106697762 () rs orientation: forward

Symbol	Name	Function Class
Cd53	CD53 antigen	297 bp upstream
Rr397926	regulatory region 397926	349 bp downstream
Rr582867	regulatory region 582867	1365 bp distal
Rr582868	regulatory region 582868	308 bp distal
Rr582869	regulatory region 582869	within coordinates
Tssr1003	transcription start site region 1003	1898 bp downstream
Tssr31143	transcription start site region 31143	1675 bp downstream
Tssr31144	transcription start site region 31144	1638 bp downstream
Tssr31145	transcription start site region 31145	1564 bp downstream
Tssr31146	transcription start site region 31146	270 bp downstream
Tssr35000	transcription start site region 35000	1867 bp upstream
Tssr35001	transcription start site region 35001	418 bp upstream
Tssr35002	transcription start site region 35002	401 bp upstream
Tssr35003	transcription start site region 35003	374 bp upstream
Tssr35004	transcription start site region 35004	362 bp upstream
Tssr35005	transcription start site region 35005	306 bp upstream
Tssr35006	transcription start site region 35006	292 bp upstream
Tssr35007	transcription start site region 35007	260 bp upstream