rs255171481 SNP Detail

Summary

• ID
  rs255171481
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:63778094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGGAGCT TTAAAGCTTT
  ATTTCAATAT CCATACTTGC TGATACTTGT AAGGCCCTAG CTTTCAGCAA CTAGTATGCT
  GCAGAGTCTG TGGTCCAAGG CAACTTGGAA GAATTATAAA TTAGGTGAGT TCACACTTGG
  GCAGGGTGTT GCACCAGTGG TATTCATACA GTATCCAAAT CACCATGCCT GGATCTCACC
  Y
  CAAGCCTGTG AGTCATGTGA GCTGACCACG CAGTCCTTTC CAGACAGTGT GTAAGAGTTC
  TCTCTCAAGG ATACTTTTCT AAGCTACGGT TTGACTTTCT CCCCCTACCC CCATTTCAAA
  CAAACGAAAT TTCCCAAGAT GGTGTGGCCC TGCACATTAT GTGTGCATCT CAGAGGGTAC
  AGGTGACAAA AACACTGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361746651	MGP_WTSI_4_63520891	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255171481					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361746651	MGP_WTSI_4_63520891	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63778094 () rs orientation: forward

Symbol	Name	Function Class
Rr593618	regulatory region 593618	within coordinates
Rr593619	regulatory region 593619	443 bp proximal
Rr593620	regulatory region 593620	1480 bp proximal
Tnfsf8	tumor necrosis factor (ligand) superfamily, member 8	Intron
Tssr42075	transcription start site region 42075	1035 bp downstream
Tssr42076	transcription start site region 42076	1066 bp downstream
Tssr42077	transcription start site region 42077	1172 bp downstream
Tssr42078	transcription start site region 42078	1243 bp downstream
Tssr42079	transcription start site region 42079	1421 bp downstream
Tssr42080	transcription start site region 42080	1439 bp downstream
Tssr42081	transcription start site region 42081	1469 bp downstream