rs255159154 SNP Detail

Summary

• ID
  rs255159154
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137495339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cacacacac acacaACATA AATAAAAAAA
  TATAATGAAC ATTTAAAAGA ATCACCTTGC TCTGCCTCCC CTTACTGTTG GGGCCTGTGT
  ATTGGCTTCC AGACAATTCC ACTAGACTCT TCCCTGGAAC CTAGCAACAG CTTACATCAT
  Y
  ACCTGCTGCC AGGTGCGAGC CAACCTGGCA TATGAGAGGG ACTGCTCATC TCCCCGCCTC
  CCCCCTTGCC ATCTCTGTCC TTCCCTTTTC CAGATCCCCC TCCCTTTACT TCTCCTGCAA
  TAAATCTTTA TTCTAGGCTT GTCAGTGGGT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321367268	CHEV_4_137323943	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255159154					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137495339 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alpl	alkaline phosphatase, liver/bone/kidney			Intron
				Noncoding-Transcript-Variant
Gm63526	predicted gene, 63526			1602 bp upstream
Rr602708	regulatory region 602708			1613 bp distal
Rr602709	regulatory region 602709			1369 bp distal
Rr602710	regulatory region 602710			800 bp proximal
Rr602711	regulatory region 602711			1605 bp proximal
Tssr44134	transcription start site region 44134			1584 bp upstream
Tssr44135	transcription start site region 44135			1562 bp upstream
Tssr44136	transcription start site region 44136			1527 bp upstream
Tssr44137	transcription start site region 44137			1635 bp downstream
Tssr44138	transcription start site region 44138			1666 bp downstream
Tssr44139	transcription start site region 44139			1920 bp downstream
Tssr44140	transcription start site region 44140			1934 bp downstream
Tssr44141	transcription start site region 44141			1951 bp downstream
Tssr44142	transcription start site region 44142			1960 bp downstream
Tssr44143	transcription start site region 44143			1976 bp downstream