rs255075573 SNP Detail

Summary

• ID
  rs255075573
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137573987 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAAGCTGT ACCCGCTGCC
  GGCCGCGCGC GGTGAGCCCC GGCCCCCGCC GTGACCCCGG CCCCCGCGCC CTGCGCCCCG
  CCGGCCGCGG CCGCTCCAGC ACTCAGGGAC ACAGGCGGGG CGCTGTGGGG TGCTGGGTGA
  CGGGTCCCCT CCCCAGATCA GCCTAGGCCC CTGTGAAGTG ACAGGAGCGG GGACTCCAGC
  R
  GCTTCTCGGG CTTCACCATC CCCGGGTTCT GTAATTTGTC CGTTCCTTAA GCAAGTATCT
  TCGAATACCT TAGATGACAC TGCTTTTCCC AGGGAGGAGA GAGCCCTTAC AAGACAGCTC
  CACTTTCGAA AGGGATGGTG AAGTTATTGA TGATTCCTAA ATAGTGTCTG GTTTGATATG
  GCACCGTAAG TACCCGCAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359894962	MGP_WTSI_3_137531190	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255075573					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359894962	MGP_WTSI_3_137531190	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137573987 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13867	CpG island 13867			within coordinates
Dnajb14	DnaJ heat shock protein family (Hsp40) member B14			Intron
				mRNA-UTR
H2az1	H2A.Z variant histone 1			1304 bp downstream
Rr586005	regulatory region 586005			1856 bp distal
Rr586006	regulatory region 586006			541 bp distal
Rr586007	regulatory region 586007			450 bp distal
Rr586008	regulatory region 586008			1234 bp proximal
Tssr31918	transcription start site region 31918			429 bp downstream
Tssr31919	transcription start site region 31919			392 bp downstream
Tssr31920	transcription start site region 31920			350 bp downstream
Tssr31921	transcription start site region 31921			313 bp downstream
Tssr31922	transcription start site region 31922			262 bp downstream
Tssr31923	transcription start site region 31923			157 bp downstream
Tssr31924	transcription start site region 31924			109 bp downstream
Tssr31925	transcription start site region 31925			97 bp downstream