rs255024772 SNP Detail

Summary

• ID
  rs255024772
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:102712092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAAATAAC ATCCCTTACT
  CTCCCTTGGA TACCTGTCTG TGTTCTTGCC CCAGTTCAGT CAGGAGAGTC TTCAGAACTT
  GGAAATCATG CAGTTCGTTA CTTGGCCTCA GTTTCCTTAC CTGGGACAAT GAGCTTTCTA
  TGAGGTGACG TCCAGGTCCC CTAGAAGGCC ACACACTGAG CAGTCGGCCA CACCTGGGGG
  S
  GGGGGGGAGG GTGGCAAAGA GATGGAAAGG GAGAGGGAGA AGAAAAGAGA GTGGGAGAGA
  AAAAGAGAGA GTAGGAGGGG GGCTAAATGA GCCCCAGGGC AAGCTCAGCT AATTTGTATG
  TGGCCAAAGC CTTTCTTTCC CATTGCCAAG TCTATTAAAG TAAGTTATTC CTCACACCTT
  TGCCTCAGAT GTCCCGTCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321235125	CHEV_4_102527500	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255024772					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102712092 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm69082	predicted gene, 69082			within coordinates
Rr596318	regulatory region 596318			1115 bp distal
Rr596319	regulatory region 596319			241 bp proximal
Rr596320	regulatory region 596320			1243 bp proximal
Sgip1	SH3-domain GRB2-like (endophilin) interacting protein 1			Intron
				Noncoding-Transcript-Variant