rs254986189 SNP Detail

Summary

• ID
  rs254986189
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132482573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTCTTGT GAAATGAATA
  TGGTGGTAAC AGTACCCAGT CTCCTGGGAA CATCCAGGTG TGGTGTGGGC CGGTGGTGCT
  GGCTACTAAG GAGGTTCTTG GAGGCTCACT TGAGCTCAGA GGTTCAAGGT AAACCTGAGC
  AACACAGGGA GCTCCCTGAG ATTCAATAAC CTGCACAGCC AGGTGGCCCA GCAGTGAAGG
  R
  ACTGCCACCA AGTCTGATGA CCTGAGTTTC ATCCCTAGGA CCCATGAGTC ACGCACGAGG
  TGGAAGGAGA GAACTATCTC CTCCAAGCAA GTTCTCCTCT GATCTCCGCA CAGTGTGTGT
  GTAGGCATGA TATATATGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTA TATATATATG
  ATCAAGACTT TTATTTTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321336201	CHEV_4_132311177	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254986189					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132482573 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14971	CpG island 14971	1641 bp proximal
Rr601060	regulatory region 601060	1959 bp distal
Rr601061	regulatory region 601061	707 bp distal
Rr601062	regulatory region 601062	508 bp distal
Rr601063	regulatory region 601063	1275 bp proximal
Rr601064	regulatory region 601064	1980 bp proximal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	Intron
Tssr43702	transcription start site region 43702	1842 bp downstream
Tssr43703	transcription start site region 43703	1845 bp downstream
Tssr43704	transcription start site region 43704	1900 bp downstream
Tssr43705	transcription start site region 43705	1967 bp downstream
Tssr43706	transcription start site region 43706	1986 bp downstream