rs254966494 SNP Detail

Summary

• ID
  rs254966494
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54478765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTTTACCT TCCCCAACCA
  TATCTATTCT ACCAACGAAT AGGGGTAAGG TTGTTTTAAT GAGATGTTCC CCATAATCTC
  GGGAGTTTGG ATGTGTCCCC AAGTGATGGA GCTGTTTGGG AGGTTTAGGG GGTTGTTTCT
  CCCTCCTCTT CCTCTCCCTC CCCTCCCCCT CTTCCCTCCT AGCAGTTCCG GATATGAGCC
  Y
  TCAGCTTCCT GCTCTTACCA CCAGGCCTCA CTCTGCCATC ACAGGCCACA CCCCTCAGGG
  ATGAGAAGCC CAAATAATTT TTTTTTTCTT CTAAAAGTCA TCTTGCTCAT GTTGTTTTAT
  CACAGCAACT AGTGGGGGTG GGGGTGGGGG TGGGGCGGGG ATTCTGGGTA TTTGGCTTTG
  GTTTGGTGGA TTGTTTGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320771972	CHEV_3_54375266	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254966494					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54478765 () rs orientation: forward

Symbol	Name	Function Class
Gm65161	predicted gene, 65161	within coordinates
Rr576809	regulatory region 576809	642 bp distal
Tssr29130	transcription start site region 29130	1427 bp downstream