rs254892477 SNP Detail

Summary

• ID
  rs254892477
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121515742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGTGTCTTC ACGCATGTCT
  GCTTTAAGGA ATAGCCAACA GGATATTTCT GCCTATGAAC AATAAGTTCC CCAAACCGCG
  AGTGTTTCCC ACACCTGCTG AGGAACACAG TTGAGGGTCC GTGGATGGAA AAAAGATCAC
  CCTTTGAACA GTTTTCTTGA TGCCCTCTTC CTTTGCTCAG TTGGGAGTAA AAGAAAGTGC
  R
  GTCAAGAGGG AAAGTCCCTG GAGTAGAGGA CCAGATAGAG CTACATTGTG TACTTAGGCC
  AGTGAGCACA CGGACCAGCT GACCTCAAGA TTGGTATTGT AGAAGGCTAT CTAAGAGGTT
  CTGCCCTGTC CATTCTCAGA CATAAGCAGG AAGCCTAATC AAAAGCTACT GTGAGTGGGA
  CGACAGCTTA GTTACTCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359482646	MGP_WTSI_3_121425011	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254892477					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359482646	MGP_WTSI_3_121425011	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121515742 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13760	CpG island 13760	873 bp proximal
F3	coagulation factor III, tissue factor	1444 bp upstream
Gm43823	predicted gene 43823	within coordinates
Gm64338	predicted gene, 64338	within coordinates
Rr584147	regulatory region 584147	999 bp distal
Rr584148	regulatory region 584148	174 bp distal
Rr584149	regulatory region 584149	557 bp proximal
Rr584150	regulatory region 584150	631 bp proximal
Rr584151	regulatory region 584151	1411 bp proximal
Rr584152	regulatory region 584152	1455 bp proximal
Rr584153	regulatory region 584153	1627 bp proximal
Rr584154	regulatory region 584154	1639 bp proximal
Tssr31453	transcription start site region 31453	1422 bp upstream
Tssr31454	transcription start site region 31454	1463 bp upstream
Tssr31455	transcription start site region 31455	1487 bp upstream
Tssr31456	transcription start site region 31456	1508 bp upstream
Tssr35426	transcription start site region 35426	1302 bp downstream