rs254872989 SNP Detail

Summary

• ID
  rs254872989
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152362172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ggttcagtt cccagtcccc gcgtgctgac
  tcgcagccga ctggaactcc agttccagga gacctaaagt cctctcctgt tctagaaaca
  gttgcggtat actggcagaa cactcataca tatagtacaa aaataaaTAA ATCCAAAGAC
  G
  CTCAGTTTTG GCCCAGCCTG GCCTGAGACT GTAAGCGAAC AGGTGGCTTG TAAGAAAGTT
  CAGATTCAgg gctggtgaga tggctcagtg ggtaagagca cccaactgct cttccgaagg
  tctgaagttc aaatcccagc aaccacacgg                                 
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321434049	CHEV_4_151651824	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254872989					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152362172 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15402	CpG island 15402	1389 bp proximal
Gpr153	G protein-coupled receptor 153	Intron
Rr605819	regulatory region 605819	882 bp distal
Rr605820	regulatory region 605820	1167 bp distal
Rr605821	regulatory region 605821	177 bp proximal
Rr605822	regulatory region 605822	380 bp proximal
Rr605823	regulatory region 605823	560 bp proximal
Rr605824	regulatory region 605824	1103 bp proximal