rs254868346 SNP Detail

Summary

• ID
  rs254868346
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:70493630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAATAGTA GGGGCAGCCC
  CAGTTACCAG TCTGCATCTG GAGCACAAAT GTTACAAAAT ATGAAATCAT TGTATAGAGG
  GTATAAACCA AGGGAGCTTT AGTGATTATG TCATGAAAGC AAATGTTTTT AAGTTTTTAA
  CCCTCTCTCT CCCTGATTTT GCCACTCATT GCCTTACCTC TGTTTTCAGA GAGAAAAAAA
  S
  AGTTCTCTCC CTCCTATCCG TTGCTTCCTA AGGCATGGTG GTACGTCCCA CTACAGACCC
  CGATCTTGTG AGCCAATGTG TCTATAGCAG GAAACTTTTG AGATAAACTC ACCCATGTTT
  GAACTGATGT AATTTCACTT TCTGTGGTAA CTACCAGTTT GCTGGCCGTT CACTTGTTAG
  TGGTAAAAAC ACTATTTGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354398845	MGP_WTSI_2_70501343	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254868346					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354398845	MGP_WTSI_2_70501343	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70493630 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11730	CpG island 11730			886 bp distal
Gm26558	predicted gene, 26558			1177 bp upstream
Gorasp2	golgi reassembly stacking protein 2			Intron
				Noncoding-Transcript-Variant
Rr397027	regulatory region 397027			434 bp upstream
Rr558587	regulatory region 558587			1686 bp distal
Rr558588	regulatory region 558588			1933 bp distal
Rr558589	regulatory region 558589			1761 bp distal
Rr558590	regulatory region 558590			1341 bp distal
Rr558591	regulatory region 558591			705 bp distal
Rr558592	regulatory region 558592			507 bp proximal
Rr558593	regulatory region 558593			694 bp proximal
Tssr18225	transcription start site region 18225			1826 bp downstream
Tssr18226	transcription start site region 18226			1804 bp downstream
Tssr18227	transcription start site region 18227			1792 bp downstream
Tssr18228	transcription start site region 18228			1734 bp downstream
Tssr18229	transcription start site region 18229			1594 bp downstream