rs254806784 SNP Detail

Summary

• ID
  rs254806784
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150170267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGTTAGC CCTCGTGGGT
  CCTGAACTTA AGCCCTCTGC TCTTCATTGC TGGCCCATCT TTCCAGCCCA AGTACTTGAG
  GGAGAGCAAA TGCTATAGAT TAAATCATTA CTGTGGTTGC ACAAACTAAT AAATGTACTA
  AAACTCAGTG ACTTGTAGGG CTAAAAGGGC CATTGTTGAT GACAATAAAA CATACATTTT
  W
  AAAATTTATT ATTATTATTT ATTTATTTGT TTGTTTGTTT GTTTGTTTTT GGTTTTTCCA
  GACAGGGTTT CTCTGTATAG CCCTGGCTGT CCTGGAACTC ACTTTGTAGA CCAGGCTGGC
  CTTGAACTCA GAAATCCACC TGCCTCTGCC TCTCAAGTGC TGGGATTAAA GGCGTGCGCC
  ACTACTTCCC GGCCTTATTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321428020	CHEV_4_149459919	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254806784					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150170267 () rs orientation: forward

Symbol	Name	Function Class
Gpr157	G protein-coupled receptor 157	1693 bp upstream
Rr398878	regulatory region 398878	1321 bp upstream
Rr605170	regulatory region 605170	141 bp distal
Rr605171	regulatory region 605171	223 bp distal
Rr605172	regulatory region 605172	1065 bp proximal
Rr605173	regulatory region 605173	1903 bp proximal
Tssr40369	transcription start site region 40369	1703 bp upstream
Tssr40370	transcription start site region 40370	1836 bp upstream