rs254754178 SNP Detail

Summary

• ID
  rs254754178
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101718841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGAGGAGCA GGAAGGTTGC
  CAGTGTTGCA AACGTAAAAA GACAAACACC TAGACTAGTT TTGCAGGTGC CAAGACCCTC
  CAGAGCAGTA GTCCTATGTG TCATGGGGAA CTTCCCGGCC GATGCATCAA CATGTAGTGC
  CAGGTAAATG TTGGTGATCT CCAAAAACAC AGACAGGAGC CAATCTGATA TAACTCACAT
  M
  AGGGTCTTTA TTCTAGTTGA GTTAGTTCTC TCCCAACCCC CAAGAGTATC ACCATCACAC
  AGGACAGTCT TGGTGGTGTA GGAGCCCCCC CCTGCCCCCC GATTATCTAT CTGGGCAAAG
  GCTTTAAATT AAGCACCAAG TGGGAGGTAA GTGTGAAAGC ATCTAATTGG AAAGCTATTG
  TTGCCTTTAA CATAATAGGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321231590	CHEV_4_101534249	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254754178					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101718841 () rs orientation: forward

Symbol	Name	Function Class
Rr596209	regulatory region 596209	451 bp distal
Rr596210	regulatory region 596210	625 bp distal
Rr596211	regulatory region 596211	541 bp distal