rs254744537 SNP Detail

Summary

• ID
  rs254744537
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113601707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCTGCCTT GGTGATGACA
  ACTTGGAGGG TTACAGACAA AAAAAATGTA TGAACAGACA AGAACCAGCC TGTGTCATAA
  TTGCTGCGCT AGGCACCGAG CTTAGAGGTT TGCGAAAGCA TGGGCAGAGT GTGGGTGCGT
  CCAGGTGAAG AAAGAGCACG CAGCTTAGGA GAACCGGAGT AGGATAAGTC AGCTGAGGGA
  R
  TTAACAGTTG TAGTTGGGGG ATCACCTTTA CCGATTGGCG TCTTGGCCGA AAACAAGTGA
  GTATGGGATA ACGGGTTGAA CTCTCGATCT TTCTGCCTTC GCCACTGATT TCAGGTTTGT
  ACCAAGCCTG ACCACGTAAG CTTATTAACT GTGACAAGCA TCAGTGGAAG TCAGTCAGTT
  CTATCAGTGT CATGACTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321911162	CHEV_6_113574740	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254744537					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113601707 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17851	CpG island 17851			within coordinates
Gm66537	predicted gene, 66537			1046 bp downstream
Rr636555	regulatory region 636555			777 bp distal
Tssr58233	transcription start site region 58233			709 bp downstream
Tssr58234	transcription start site region 58234			684 bp downstream
Tssr58235	transcription start site region 58235			582 bp downstream
Tssr58236	transcription start site region 58236			68 bp downstream
Tssr62461	transcription start site region 62461			1214 bp upstream
Vhl	von Hippel-Lindau tumor suppressor			Intron
				Noncoding-Transcript-Variant