rs254732724 SNP Detail

Summary

• ID
  rs254732724
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76284498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCTGTTGC AATTTCCAGG
  GTTACCTAGG CTCCAGGGTG TCGACCCTAC CCTGGTTGTT TCATAAGTTC ATAGGGTGAT
  TGACTTACAT CCCATCTGGT TTAGAATCTC AACCCCATAT ATTCCCCCCC CCTTTTAAAT
  TCCTGTCTGT GTTCTCTATG CCAGTGCACT CTCTGTCCCA GGGTCCCCTT AGGCACTGCC
  Y
  TTGACCCCTC TCTGGCCAAA GTCTCTGCCA CAAAGAGTTT CCTGAAACCC TCAGGGAGCT
  CCTGTCTGAT GGTCTCCTAG GTATCCAGCC ACACTGCCTT TTTACTTTGA GGGTTTCAAG
  GAAGGACAAG AGTGTCCTAG AGGCAGTGGC AAGTGACCAG AATGGTGTGG TGTAGGTCTA
  GGGGCAATGA GGAGTCCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380945488	MGP_WTSI_10_75911409	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	C	C	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254732724					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	C	C	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380945488	MGP_WTSI_10_75911409	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76284498 () rs orientation: forward

Symbol	Name	Function Class
2610028H24Rik	RIKEN cDNA 2610028H24 gene	417 bp upstream
Rr384948	regulatory region 384948	221 bp downstream
Rr434267	regulatory region 434267	1925 bp distal
Rr434268	regulatory region 434268	260 bp distal
Rr434269	regulatory region 434269	191 bp proximal
Tssr94175	transcription start site region 94175	1278 bp downstream
Tssr94176	transcription start site region 94176	393 bp upstream
Tssr94177	transcription start site region 94177	410 bp upstream
Tssr94178	transcription start site region 94178	431 bp upstream
Tssr94179	transcription start site region 94179	457 bp upstream