rs254698807 SNP Detail

Summary

• ID
  rs254698807
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:85742822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGAGGGTG AAGGGAAGAC
  CACTTTGTTC TTGTGAAGCT GGTGTTGCCA CCCTCAGATT CTAAAGTTTA GATGCAGGGA
  CGACGCCATT GTCGGGTTCC AAGGAGCCTC CTGTGGGTCT CCAGAACTTC CTTTCTGGCT
  GAGGGAGGGA GCAGTCGGTT GTAGTAAGAA GCACTGAACT CGTGGGGGCG CTCGTTCCTA
  R
  GAAGACAACC TGCCCTTCCC GACGCTCTTG CTTTGGGATA CCAGCATGGG AAGACTTGTT
  TCCTTTTGAA GTTTCCTCGG ATGATATCTT TAATGCTGCC TTTATTTCCA GATGAGGAAT
  AATCGTTAAG ACTAAAATAG TAGAGTTAAA AGGAAAGATC AAGCTAGGAG TCCAGCAGGT
  TAGTAGAGAC TTCCACCATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss369072565	MGP_WTSI_6_85715834	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs254698807					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369072565	MGP_WTSI_6_85715834	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85742822 () rs orientation: forward

Symbol	Name	Function Class
Nat8f3	N-acetyltransferase 8 (GCN5-related) family member 3	96 bp upstream
Rr633261	regulatory region 633261	1899 bp distal
Rr633262	regulatory region 633262	6 bp distal
Rr633263	regulatory region 633263	219 bp proximal